Clinical Data Guide
The purpose of the Know Your Tumor Clinical Data Guide is to provide SPARK end-users with information and guidance regarding clinical data tables and their descriptions. All of the files below are available in .csv file format.
Note:
This data guide assumes a baseline level knowledge of pancreatic cancer, genomic and clinical data and does not cover basic descriptions and explanations.
| Data Table Name | Description |
|---|---|
| ADVERSE_EVENTS | This file provides detailed information for adverse events related to a patients care plan |
| ASSESSMENTS | This file provides details on a patient's past assessments, such as Karnofsky Score, ECOG score, etc. |
| CANCER | This is the primary file for information pertaining to a patient's primary or secondary diagnosis of a cancer/malignant neoplasm |
| CELL_THERAPY | This file is used to describe a patients cell therapy treatment |
| CURRENT_IHC_RESULTS | This file contains Tempus-performed IHC results from LIMS. |
| CURATED_MOLECULAR_RESULTS | This file provides information pertaining to sequencing data as appears in abstracted clinical documents |
| COMORBIDITY | This file provides a high-level overview of each instance of a comorbidity at the condition level for each patient |
| DEID_CLINICAL_TIMELINES | This file is a longitudinal view of clinical events per patient |
| DEID_PATIENT_SUMMARY | This file provides a summary of various attributes associated with a Patient. |
| DIAGNOSTIC_REPORT_TUMOR_CHARACTERIZATION | This file is primarily used to identify the date of cancer diagnosis at a diagnostic_report_id level |
| DIGITAL_PATHOLOGY_METADATA | This file collection of slides scanned at Tempus including metadata about the sample scan and image quality |
| DISEASE_CHARACTERIZATION | This file provides detailed information pertaining to characterization of malignancies of hematopoietic and lymphoid tissues (heavy chain light chain subtype amyloid presence number of lytic lesions present) |
| ENCOUNTERS | This file is primarily used to provide further information pertaining to encounters with the patient |
| FOLLOW_UP_STATUS | This file provides information pertaining to the last known status of a patient's cancer |
| HISTOLOGY | This is the primary file for tumor histology |
| HISTOPATH_GRADE | This file provides information pertaining to the histology grade for each cancer/malignant neoplasm diagnosis at a more granular level |
| IMAGING_PROCEDURES | This file provides detailed information for each instance of an imaging procedure |
| LABS | This file provides detailed information pertaining to each instance of a laboratory test performed |
| LYMPHATIC_INVASION | This file provides information for each lymphatic tumor invasion finding |
| M_STAGE | This is the primary file for information pertaining to m-stage in the event of an m-stage category finding |
| MEDICATIONS | This is the primary file used to identify the medication administered to a patient, along with additional relevant information |
| METASTASES | This is the primary file for information pertaining to a patient's diagnosis of a secondary cancer/malignant neoplasm |
| N_STAGE | This is the primary file for information pertaining to n-stage |
| ONCO_CARE_PLAN | The file rolls up treatments into care plans. A care plan represents a distinct treatment plan made up of one or more therapies essentially a regimen where a regimen can consist of medications and/or radiotherapy. Surgeries are not included in care plans |
| ONCO_LINE_OF_THERAPY | The file transforms therapy-level information (i.e. individual rows for medications radiotherapy and cell therapy) into an aggregated representation of all treatments for a distinct line of therapy in the advanced setting |
| OUTCOMES | This file provides detailed information regarding the outcome of patient's care plan |
| PATIENT | The file provides demographic information for each patient |
| PATIENT_ADDRESS | This file provides the zip code and state of the patients address when available |
| PERINEURAL | This file provides information pertaining to each perineural invasion |
| PRIMARY_TUMOR_CHARACTERIZATION | This file contains information for the primary curated cancer/malignant neoplasm diagnosis |
| PROCEDURES | This file provides a description of any instance of a surgery performed on a patient |
| RADIOTHERAPY | This file provides pertinent information of any instance of radiation therapy used on a patient |
| RECURRENCE | Patients in this file have had an instance of recurrence of their primary cancer |
| STAGE | This is the primary file for information pertaining to a tumor stage for each diagnosis with a tumor stage |
| T_STAGE | This is the primary file for information pertaining to t-stage in the event of an t-stage category finding |
| TREATMENT_STATUS | This file provides information pertaining to the treatment status of a patient |
| TUMOR_SIZE | This file provides information pertaining to the size of the tumor in each instance a tumor size was identified |
| VITALS | This file provides information pertaining to the patient's vitals |
Updated 2 months ago