The purpose of the Know Your Tumor Molecular Data Guide is to provide SPARK end-users with information and guidance regarding molecular data tables and their descriptions.
This data guide assumes a baseline level knowledge of pancreatic cancer, genomic and clinical data and does not cover basic descriptions and explanations.
|Data Table Name||Description|
|G_DNA_CNV_SEGMENTS||This file contains copy number variation (CNV) data derived from an analysis of allele-specific deletions|
|G_HLA||This file provides human leukocyte antigen (HLA) typing predictions for a given patient|
|G_INFILTRATION||This file provides predicted immune infiltration percentages for a tumor sample|
|G_MOLECULAR_MASTER_FILE||This file provides additional information for the DNA and RNA variants|
|G_MOLECULAR_MASTER_FILE_FILTERED||This file provides additional information for the DNA and RNA variants|
|G_MOLECULAR_METADATA||This file provides metadata pertaining to the samples that have undergone sequencing at Tempus|
|G_MSI||This file provides microsatellite instability status of a given tumor sample|
|G_NEOEPITOPE_DNA||This file provides information pertaining to the antigenicity of somatic variants, specific to DNA|
|G_PIPELINE_VERSION||Details version of the pipeline|
|G_RNA_GENE_EXPRESSION||This file contains raw expression gene counts and normalized transcripts per kilobase million (TPM) that results from the RNA expression pipeline (aligned with Kallisto) at a group level.|
|G_RNA_TRANSCRIPT_EXPRESSION||This file contains raw expression transcript counts, transcript length and normalized transcripts per kilobase million (TPM) that result from the RNA expression pipeline (aligned with Kallisto) at a group level.|
|G_TMB||This file provides tumor mutational burden of a given tumor sample|
Updated about 1 year ago