Molecular Data Guide
The purpose of the Know Your Tumor Molecular Data Guide is to provide SPARK end-users with information and guidance regarding molecular and genomic data tables and their descriptions. All of the files below are available in .csv file format.
Note:
This data guide assumes a baseline level knowledge of pancreatic cancer, genomic and clinical data and does not cover basic descriptions and explanations.
| Data Table Name | Description |
|---|---|
| G_DNA_CNV_SEGMENTS | This file contains copy number variation (CNV) data derived from an analysis of allele-specific deletions |
| G_DNA_CNV_SEGMENT_GENES | This file contains copy number variation (CNV) data derived from an analysis of allele-specific deletions captured at the gene level |
| G_HLA | This file provides human leukocyte antigen (HLA) typing predictions for a given patient |
| G_INFILTRATION | This file provides predicted immune infiltration percentages for a tumor sample |
| G_MOLECULAR_MASTER_FILE | This file provides additional information for the DNA and RNA variants |
| G_MOLECULAR_MASTER_FILE_FILTERED | This file provides additional information for the DNA and RNA variants |
| G_MOLECULAR_METADATA | This file provides metadata pertaining to the samples that have undergone sequencing at Tempus |
| G_MSI | This file provides microsatellite instability status of a given tumor sample |
| G_NEOEPITOPE_DNA | This file provides information pertaining to the antigenicity of somatic variants, specific to DNA |
| G_PIPELINE_VERSION | Details version of the pipeline |
| G_RNA_GENE_EXPRESSION | This file contains raw expression gene counts and normalized transcripts per kilobase million (TPM) that results from the RNA expression pipeline (aligned with Kallisto) at a group level. |
| G_RNA_TRANSCRIPT_EXPRESSION | This file contains raw expression transcript counts, transcript length and normalized transcripts per kilobase million (TPM) that result from the RNA expression pipeline (aligned with Kallisto) at a group level. |
| G_TMB | This file provides tumor mutational burden of a given tumor sample |
| G_TUMOR_PURITY | This file provides information on the samples tumor purity |
Updated about 1 month ago